biology
BioNeMo MSA-Search
BioNeMo MSA-SearchNVIDIA NIM for MSA-Search multiple sequence alignment generation.
Model details
View repositoryExample usage
Call BioNeMo MSA-Search on Baseten using the NIM standard MSA route.
Note: You need to procure your own NVAIE licenses to access this NIM.
Input
1import os
2import requests
3
4MODEL_ID = os.environ["BASETEN_MODEL_ID"]
5BASETEN_API_KEY = os.environ["BASETEN_API_KEY"]
6BASETEN_URL = (
7 f"https://model-{MODEL_ID}.api.baseten.co/environments/production/sync"
8 "/biology/colabfold/msa-search/predict"
9)
10
11sequence = "LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF"
12
13payload = {"sequence": sequence}
14
15response = requests.post(
16 BASETEN_URL,
17 headers={
18 "Authorization": f"Bearer {BASETEN_API_KEY}",
19 "Content-Type": "application/json",
20 },
21 json=payload,
22 timeout=300,
23)
24response.raise_for_status()
25result = response.json()
26print(result)
27JSON output
1{
2 "a3m": ">query\nLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF\n<alignment rows>"
3}
